Start by making the pastry. Add the flour, salt, and sugar to a food processor and pulse and few times to blend everything together. Next, add in the butter, cheese, water, and bourbon; lightly pulse.
Next, make the filling by coring and thinly slice the apples. Mix the apples with lemon juice, bourbon, honey, cinnamon, ground, cloves, and allspice. Let sit and marinate for about an hour.
Roll out the dough, place one layer in a 9-inch pie pan, and pour in the apple pie filling.
Cover with the other layer on top, secure, and cut air vents.
Bake at 425 for 20 minutes and then lower the temperature to 375 and bake for about 60-80 minutes more. Bake until very golden brown.